tag:blogger.com,1999:blog-1071661434473559589.post1470134594100714643..comments2024-03-27T16:30:10.302+11:00Comments on The Genome Factory: Cool use of Unix paste with NGS sequencesTorsten Seemannhttp://www.blogger.com/profile/12241185247897084810noreply@blogger.comBlogger9125tag:blogger.com,1999:blog-1071661434473559589.post-55538842683475955612024-02-22T04:04:26.046+11:002024-02-22T04:04:26.046+11:00"Meet And Greet At Luton" by EzyBook sou..."Meet And Greet At Luton" by EzyBook sounds like the perfect solution for hassle-free airport parking! This blog post on utilizing Unix paste with NGS is fascinating and shows the versatility of technology in genomic research. It's amazing to see how different fields intersect, demonstrating the endless possibilities when innovation meets science. Looking forward to more insightful content from The Genome Factory.James Carryhttps://www.blogger.com/profile/07851902931797634909noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-59149014798887670662020-11-11T21:50:13.645+11:002020-11-11T21:50:13.645+11:00maybe
sed -n '1~4s/^@/>/p;2~4p' input....maybe<br /><br />sed -n '1~4s/^@/>/p;2~4p' input.fastq output.fasta<br /><br />is an alternativeUnknownhttps://www.blogger.com/profile/10774624803788154034noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-22769045034630994962018-07-13T01:39:04.505+10:002018-07-13T01:39:04.505+10:00Most parsers ignore it, and happily accept a blank...Most parsers ignore it, and happily accept a blank ID.<br /><a href="https://www.mobitairportparking.co.uk/" rel="nofollow">compare airport parking</a>Isobe Ltinhttps://www.blogger.com/profile/18401386815234456223noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-21637683464593039612013-07-10T08:15:28.628+10:002013-07-10T08:15:28.628+10:00Alok
Thanks for the feedback! A good biologist wh...Alok<br /><br />Thanks for the feedback! A good biologist who can do computing/programming as well is an awesome combination when doing NGS studies.<br /><br />I recommend everyone write a blog. It forces you to understand things properly. Often we "think" we understand something, but really we don't. It also it good for practising scientific writing and clear communication. The only downside is that it does take time, but I try to think of it as an investment.<br /><br />All the best for your future projects!<br /><br />Torsten Seemannhttps://www.blogger.com/profile/12241185247897084810noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-80403557380334600182013-07-09T23:20:41.127+10:002013-07-09T23:20:41.127+10:00I am enjoying reading this blog of yours...I am a ...I am enjoying reading this blog of yours...I am a pure biologist by nature or by degree should i say??ha ha ha...<br />I am looking forward in implicating various programming languages somewhere in studying gene expression along with the usual wet lab skills. Now that i have learnt C,C++,Linux(LPI 101) and perl....am now switching to NGS workflow...I too have started a blog as it helps improve mistake and learn....<br />Keep up the good jobAnonymoushttps://www.blogger.com/profile/02898912304860534697noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-1611290595216262072012-08-17T11:22:25.720+10:002012-08-17T11:22:25.720+10:00Daniel, thanks for the comment and link to your bl...Daniel, thanks for the comment and link to your blog - some cool content there too. You're in my Google Reader list now.Torsten Seemannhttps://www.blogger.com/profile/12241185247897084810noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-81722142841167610822012-08-15T20:48:50.575+10:002012-08-15T20:48:50.575+10:00Nice! I love finding little Linux/UNIX gems like t...Nice! I love finding little Linux/UNIX gems like this! <a href="http://gremlin2.soic.indiana.edu/blog/" rel="nofollow">http://gremlin2.soic.indiana.edu/blog/</a>Daniel Standagehttps://www.blogger.com/profile/04215488669636098481noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-84804127476206563272012-07-31T09:32:13.040+10:002012-07-31T09:32:13.040+10:00Michael, The example was meant to be illustrative....Michael, The example was meant to be illustrative. I assume people are very familiar with FASTQ and FASTA, but not familiar with 'paste'. Can you provide a command line which does it the way you suggest?Torsten Seemannhttps://www.blogger.com/profile/12241185247897084810noreply@blogger.comtag:blogger.com,1999:blog-1071661434473559589.post-62027873140537764322012-07-31T09:15:22.579+10:002012-07-31T09:15:22.579+10:00In Example 1, why not just convert the input FASTQ...In Example 1, why not just convert the input FASTQ into a 2-column file in the first place?Michael Hoffmanhttps://www.blogger.com/profile/08793839507336794638noreply@blogger.com